SAGx

Statistical Analysis of the GeneChip

Bioconductor version: 2.10

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg, <pi.broberg at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SAGx")

To cite this package in a publication, start R and enter:

    citation("SAGx")

Documentation

PDF R Script samroc - example
PDF   Reference Manual

Details

biocViews Bioinformatics, Clustering, DataImport, DifferentialExpression, Microarray, MultipleComparisons, OneChannel, Preprocessing, Software
Depends R (>= 2.5.0), stats, multtest, methods
Imports Biobase, stats4
Suggests KEGG.db, hu6800.db, MASS
System Requirements
License GPL-3
URL http://home.swipnet.se/pibroberg/expression_hemsida1.html
Depends On Me
Imports Me
Suggests Me
Version 1.30.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source SAGx_1.30.0.tar.gz
Windows Binary SAGx_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary SAGx_1.30.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center