ReQON
Recalibrating Quality Of Nucleotides
Bioconductor version: 2.10
Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.
Author: Christopher Cabanski, Keary Cavin, Chris Bizon
Maintainer: Christopher Cabanski <cabanski at dom.wustl.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")
To cite this package in a publication, start R and enter:
citation("ReQON")
Documentation
| R Script | ReQON Tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software |
| Depends | R (>= 2.15.0), Rsamtools, seqbias |
| Imports | rJava, graphics, stats, utils, grDevices |
| Suggests | |
| System Requirements | Java version >= 1.6 |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.3.9 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | ReQON_1.3.9.tar.gz |
| Windows Binary | ReQON_1.3.9.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ReQON_1.3.9.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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