RTopper

This package is designed to perform Gene Set Analysis across multiple genomic platforms

Bioconductor version: 2.10

the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

Author: Luigi Marchionni <marchion at jhu.edu>, Svitlana Tyekucheva <svitlana at jimmy.harvard.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RTopper")

To cite this package in a publication, start R and enter:

    citation("RTopper")

Documentation

PDF R Script RTopper user's manual
PDF   Reference Manual
Text   LICENSE

Details

biocViews Microarray, Software
Depends R (>= 2.11.0), Biobase
Imports limma, multtest
Suggests limma, org.Hs.eg.db, KEGG.db
System Requirements
License GPL (>= 3)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source RTopper_1.2.0.tar.gz
Windows Binary RTopper_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RTopper_1.2.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center