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PatientGeneSets
Patient-oriented gene-set analysis
Bioconductor version: 2.10
Patient-oriented analysis of mutations from cancer genome studies.
Author: Simina M. Boca, Giovanni Parmigiani
Maintainer: Simina M. Boca <sboca at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PatientGeneSets")
To cite this package in a publication, start R and enter:
citation("PatientGeneSets")
Documentation
| R Script | PatientGeneSetsTutorial | |
| Reference Manual |
Details
| biocViews | Bioinformatics, Software |
| Depends | R (>= 2.10.0), qvalue |
| Imports | AnnotationDbi, limma, methods, stats |
| Suggests | KEGG.db |
| System Requirements | |
| License | GPL (>= 2.0) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.6.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | PatientGeneSets_1.6.0.tar.gz |
| Windows Binary | PatientGeneSets_1.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | PatientGeneSets_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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