MotIV
Motif Identification and Validation
Bioconductor version: 2.10
This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.
Author: Eloi Mercier, Raphael Gottardo
Maintainer: Eloi Mercier <emercier at chibi.ubc.ca>, Raphael Gottardo <raphael.gottardo at ircm.qc.ca>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MotIV")
To cite this package in a publication, start R and enter:
citation("MotIV")
Documentation
| R Script | The MotIV users guide | |
| Reference Manual |
Details
| biocViews | ChIPSeq, ChIPchip, GenomicSequence, Microarray, Software |
| Depends | R (>= 2.10), BiocGenerics(>= 0.1.0) |
| Imports | graphics, grid, methods, BiocGenerics, IRanges(>= 1.13.5), lattice, rGADEM, stats, utils |
| Suggests | rtracklayer |
| System Requirements | |
| License | GPL 2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.10.0 |
| Since | Bioconductor 2.6 (R-2.11) |
Package Downloads
| Package Source | MotIV_1.10.0.tar.gz |
| Windows Binary | MotIV_1.10.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | MotIV_1.10.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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