Bioconductor version: 2.10
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
Author: Rory Stark<rory.stark at cancer.org.uk>, Gordon Brown <gordon.brown at cancer.org.uk>
Maintainer: Rory Stark<rory.stark at cancer.org.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("DiffBind")
To cite this package in a publication, start R and enter:
citation("DiffBind")
R Script | DiffBind User's Guide | |
Reference Manual | ||
Text | NEWS |
biocViews | Bioinformatics, ChIPseq, HighThroughputSequencing, Software |
Depends | R (>= 2.14.0), GenomicRanges |
Imports | RColorBrewer, amap, edgeR(>= 2.3.58), gplots, limma, DESeq, grDevices, stats, utils, IRanges, zlibbioc |
Suggests | DESeq |
System Requirements | |
License | Artistic-2.0 |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Version | 1.2.4 |
Since | Bioconductor 2.9 (R-2.14) |
Package Source | DiffBind_1.2.4.tar.gz |
Windows Binary | DiffBind_1.2.4.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | DiffBind_1.2.4.tgz |
Package Downloads Report | Download Stats |
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