DNAcopy

DNA copy number data analysis

Bioconductor version: 2.10

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DNAcopy")

To cite this package in a publication, start R and enter:

    citation("DNAcopy")

Documentation

PDF R Script DNAcopy
PDF   Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software
Depends
Imports
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me CGHcall, cghMCR, Clonality, CNAnorm, CRImage, snapCGH
Imports Me Clonality, cn.farms, genoset, GWASTools, MinimumDistance, Repitools, snapCGH
Suggests Me ADaCGH2, beadarraySNP, Clonality, cn.mops, fastseg, Repitools
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source DNAcopy_1.30.0.tar.gz
Windows Binary DNAcopy_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary DNAcopy_1.30.0.tgz
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