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BioSeqClass
Classification for Biological Sequences
Bioconductor version: 2.10
Extracting Features from Biological Sequences and Building Classification Model
Author: Li Hong sysptm@gmail.com
Maintainer: Li Hong <sysptm at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("BioSeqClass")
To cite this package in a publication, start R and enter:
citation("BioSeqClass")
Documentation
| R Script | cvFFSClassify0005.pdf | |
| R Script | FeatureSets16.pdf | |
| R Script | Using the BioSeqClass Package | |
| R Script | workflow.pdf | |
| Reference Manual |
Details
| biocViews | Classification, Software |
| Depends | R (>= 2.10), scatterplot3d |
| Imports | Biostrings, ipred, e1071, klaR, randomForest, class, tree, nnet, rpart, party, foreign, Biobase, utils, stats, grDevices |
| Suggests | scatterplot3d |
| System Requirements | |
| License | LGPL (>= 2.0) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.14.0 |
| Since | Bioconductor 2.5 (R-2.10) |
Package Downloads
| Package Source | BioSeqClass_1.14.0.tar.gz |
| Windows Binary | BioSeqClass_1.14.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | BioSeqClass_1.14.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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