BCRANK
Predicting binding site consensus from ranked DNA sequences
Bioconductor version: 2.10
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Author: Adam Ameur <Adam.Ameur at genpat.uu.se>
Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")
To cite this package in a publication, start R and enter:
citation("BCRANK")
Documentation
| R Script | BCRANK | |
| R Script | BCRANK_intro_fig1.pdf | |
| R Script | BCRANK_intro_fig2.pdf | |
| Reference Manual |
Details
| biocViews | SequenceMatching, Software |
| Depends | methods |
| Imports | Biostrings |
| Suggests | seqLogo |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.18.0 |
| Since | Bioconductor 2.2 (R-2.7) |
Package Downloads
| Package Source | BCRANK_1.18.0.tar.gz |
| Windows Binary | BCRANK_1.18.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | BCRANK_1.18.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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