sigaR-package | statistics for integrative genomics analyses in R |
.RCMloss-method | Internal function |
cghCall2maximumSubset | Maximum subsetting cghCall-objects. |
cghCall2order | Genomic ordering of cghCall-objects. |
cghCall2subset | Subsetting cghCall-objects. |
cghCall2weightedSubset | Weighted subsetting cghCall-objects. |
CNGEheatmaps | Parellel CN and GE heatmap plotting |
entropyTest | One-sided two-sample test for entropy comparison |
entTest-class | Class "entTest" for storing the results of the function entropyTest. |
expandMatching2singleIDs | Expand matching to single entries |
ExpressionSet2order | Genomic ordering of ExpressionSet-objects. |
ExpressionSet2subset | Subsetting ExpressionSet-objects. |
ExpressionSet2weightedSubset | Weighted subsetting ExpressionSet-objects. |
getSegFeatures | Identical signature features selection from cghCall-object. |
hdEntropy | Entropy estimation. |
hdMI | Mutual information estimation. |
matchAnn2Ann | Genomic location matching of two sets of features |
matchCGHcall2ExpressionSet | Genomic location matching of CN and GE data |
merge2cghCalls | Merge two cghCall-objects into one cghCall-object |
merge2ExpressionSets | Merge two ExpressionSet-objects into one ExpressionSet-object |
miTest-class | Class "miTest" for storing the results of the function mutInfTest. |
mutInfTest | Test for mutual information |
nBreakpoints | Number of breakpoints |
pollackCN16 | Breast cancer data (copy number) |
pollackGE16 | Breast cancer data (gene expression) |
profilesPlot | CN-GE profiles plot |
RCMestimation | Fitting of the random coefficients model. |
rcmFit-class | Class "rcmFit" for storing the results of the function RCMestimation. |
RCMrandom | Random data from the random coefficients model. |
RCMrandom-method | Methods for Function RCMrandom |
RCMtest | Hypothesis testing within the random coefficient model. |
rcmTest-class | Class "rcmTest" for storing the results of the function RCMtest. |
sigaR | statistics for integrative genomics analyses in R |
splitMatchingAtBreakpoints | Split matching at breakpoints |
summary-method | Methods for Function summary |
uniqGenomicInfo | Unique genomic location information |