qpgraph-package | The q-order partial correlation graph learning software, qpgraph. |
EcoliOxygen | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
filtered.regulon6.1 | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
gds680.eset | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
qpAnyGraph | A graph |
qpAvgNrr | Average non-rejection rate estimation |
qpAvgNrr-method | Average non-rejection rate estimation |
qpBoundary | Maximum boundary size of the resulting qp-graphs |
qpCItest | Conditional independence test |
qpCItest-method | Conditional independence test |
qpClique | Complexity of the resulting qp-graphs |
qpCliqueNumber | Clique number |
qpCov | Calculation of the sample covariance matrix |
qpEdgeNrr | Non-rejection rate estimation for a pair of variables |
qpEdgeNrr-method | Non-rejection rate estimation for a pair of variables |
qpFunctionalCoherence | Functional coherence estimation |
qpFunctionalCoherence-method | Functional coherence estimation |
qpG2Sigma | Random covariance matrix |
qpGenNrr | Generalized non-rejection rate estimation |
qpGenNrr-method | Generalized non-rejection rate estimation |
qpGetCliques | Clique list |
qpGraph | The qp-graph |
qpgraph | The q-order partial correlation graph learning software, qpgraph. |
qpGraphDensity | Densities of resulting qp-graphs |
qpHist | Histograms of non-rejection rates |
qpHTF | Hastie Tibshirani Friedman algorithm |
qpImportNrr | Import non-rejection rates |
qpIPF | Iterative proportional fitting algorithm |
qpK2ParCor | Partial correlation coefficients |
qpNrr | Non-rejection rate estimation |
qpNrr-method | Non-rejection rate estimation |
qpPAC | Estimation of partial correlation coefficients |
qpPAC-method | Estimation of partial correlation coefficients |
qpPCC | Estimation of Pearson correlation coefficients |
qpPCC-method | Estimation of Pearson correlation coefficients |
qpPlotNetwork | Plots a graph |
qpPrecisionRecall | Calculation of precision-recall curves |
qpPRscoreThreshold | Calculation of scores thresholds attaining nominal precision or recall levels |
qpRndGraph | Undirected random d-regular graphs |
qpRndHMGM | Random homogeneous mixed graphical Markov model |
qpRndWishart | Random Wishart distribution |
qpSampleFromHMGM | Sample from homogeneous mixed graphical Markov models |
qpTopPairs | Report pairs of variables |
qpUnifRndAssociation | Uniformly random association values |
qpUpdateCliquesRemoving | Update clique list when removing one edge |