inSilicoMerging-package |
Collection of Merging Techniques for Gene Expression Data. |
inSilicoMerging |
Collection of Merging Techniques for Gene Expression Data. |
measureAsymmetry |
Calculate asymmetry index for (merged) ExpressionSet |
measureGenesMeanCorrCoef |
Calculate gene mean correlation coefficient between two independent studies before and after applying batch effect removal methods. |
measureGenesOverlap |
Calculate Genes Overlap index for (merged) ExpressionSet |
measureSamplesMeanCorrCoef |
Calculate sample mean correlation coefficient between two independent studies before and after applying batch effect removal methods. |
measureSamplesOverlap |
Calculate Samples Overlap index for (merged) ExpressionSet |
measureSignificantGenesOverlap |
Compares the overlap in significant genes between two independent studies before and after applying batch effect removal methods. |
merge |
General method to merge different ExpressionSets |
plotDendrogram |
Create dendrogram from (merged) ExpressionSet |
plotGeneWiseBoxPlot |
Create gene-wise boxplot from (merged) ExpressionSet |
plotGeneWiseDensity |
Create gene-wise density plots from (merged) ExpressionSet |
plotMDS |
Create double-labeled MDS plot from (merged) ExpressionSet |
plotRLE |
Create RLE plot from (merged) ExpressionSet |