representing and modeling data in the NHGRI GWAS catalog


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Documentation for package ‘gwascat’ version 1.0.0

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gwascat-package representing and modeling data in the NHGRI GWAS catalog
chklocs operations on GWAS catalog
g17SM representing and modeling data in the NHGRI GWAS catalog
getRsids Class '"gwaswloc"'
getRsids-method Class '"gwaswloc"'
getTraits Class '"gwaswloc"'
getTraits-method Class '"gwaswloc"'
gg17N representing and modeling data in the NHGRI GWAS catalog
gw6.rs_17 representing and modeling data in the NHGRI GWAS catalog
gwascat representing and modeling data in the NHGRI GWAS catalog
gwaswloc-class Class '"gwaswloc"'
gwdf_2012_02_02 internal data frame for NHGRI GWAS catalog
gwdf_2012_03_07 internal data frame for NHGRI GWAS catalog
gwdf_2012_03_20 internal data frame for NHGRI GWAS catalog
locon6 location information for 10000 SNPs probed on Affy GW 6.0
locs4trait operations on GWAS catalog
low17 representing and modeling data in the NHGRI GWAS catalog
obo2graphNEL convert a typical OBO text file to a graphNEL instance (using Term elements)
riskyAlleleCount given a matrix of subjects x SNP calls, count number of risky alleles
rules_6.0_1kg_17 representing and modeling data in the NHGRI GWAS catalog
subsetByChromosome Class '"gwaswloc"'
subsetByChromosome-method Class '"gwaswloc"'
subsetByTraits Class '"gwaswloc"'
subsetByTraits-method Class '"gwaswloc"'
topTraits operations on GWAS catalog
[-method Class '"gwaswloc"'