%like% | Pattern matching using wildcards |
complete | Complete microbial genome dates |
doublingTime | Doubling time for genome projects |
efetch | Entrez database downloads |
einfo | Entrez database information |
elink | Entrez database links |
enaExperiment | ENA SRA experiment details |
enaFiles | ENA SRA submitted or fastq files |
enaProject | ENA projects |
enaSRA | ENA sequence read archive |
enaStudy | ENA SRA study details |
enaSubmission | ENA SRA submission dates |
enaTaxonomy | ENA taxonomy statistics |
esearch | Entrez database search |
esummary | Entrez database summaries |
genomes | Introduction to the genomes package |
genomes-lines | Add lines to a genomes plot |
genomes-plot | Genome table plots by release date |
genomes-subset | Subset genome tables |
genomes-summary | Genome table summaries |
genomes-update | Genome table updates |
genus | Extract the genus name |
image2 | Display a matrix image |
lenvs | Metagenome sequencing projects at NCBI |
leuks | Eukaryotic genome projects at NCBI |
like | Pattern matching using wildcards |
lines.genomes | Add lines to a genomes plot |
lproks | Microbial genome projects at NCBI |
month | Parse a date string |
ncbiGenome | NCBI Genome links to the Nucleotide database |
ncbiNucleotide | NCBI Nucleotide database |
ncbiProject | NCBI BioProject database |
ncbiPubmed | NCBI PubMed database |
ncbiRelease | NCBI revision history |
ncbiSubmit | NCBI submission dates |
ncbiTaxonomy | NCBI taxonomy database |
plot.genomes | Genome table plots by release date |
plotby | Plot groups of genomes by release date |
print.genomes | Print genome tables |
pub | Complete microbial genome publications |
species | Extract the species name |
sra | Microbial SRA samples at the ENA |
subset.genomes | Subset genome tables |
summary.genomes | Genome table summaries |
table2 | Format and sort a contigency table |
update.genomes | Genome table updates |
virus | Virus genomes at NCBI |
year | Parse a date string |