flowQ-package | Quality control for flow cytometry |
aggregatorList | Class "aggregatorList" |
aggregatorList-class | Class "aggregatorList" |
binaryAggregator | Class "binaryAggregator" |
binaryAggregator-class | Class "binaryAggregator" |
discreteAggregator | Class "discreteAggregator" |
discreteAggregator-class | Class "discreteAggregator" |
evaluateProcess | Evaluate QA processes |
factorAggregator | Class "factorAggregator" |
factorAggregator-class | Class "factorAggregator" |
flowQ | Quality control for flow cytometry |
initialize-method | Class "aggregatorList" |
initialize-method | Class "qaGraph" |
initialize-method | Class "qaGraphList" |
initialize-method | Abstraction of the results of a QA process |
initialize-method | Class "qaProcessFrame" |
locateDuplicatedParameters | Locate Duplicated Parameters |
names-method | Class "qaGraph" |
normalizeSets | Locate Duplicated Parameters |
numericAggregator | Class "numericAggregator" |
numericAggregator-class | Class "numericAggregator" |
outlier-class | Virtual Class "outlier" |
outlierResult-class | Class "outlierResult" |
outliers | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
outliers-method | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
outliers-methods | ~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
preProcessFlowList | Preprocess a list of flowSets to add empty flowFrames for patients in which certain aliquots are missing |
qaAggregator | Abstraction of the possible outcomes of a QA process |
qaAggregator-class | Abstraction of the possible outcomes of a QA process |
qaGraph | Class "qaGraph" |
qaGraph-class | Class "qaGraph" |
qaGraphList | Class "qaGraphList" |
qaGraphList-class | Class "qaGraphList" |
qaProcess | Abstraction of the results of a QA process |
qaProcess-class | Abstraction of the results of a QA process |
qaProcess.2DStatsPlot | Creates a QA process for 2D summary statistic comparisons across multiple samples |
qaProcess.BoundaryPlot | Creates a QA process for comparison of the percentage of boundary events for the specified parameters across multiple samples |
qaProcess.cellnumber | Create QA process of type 'cellnumber' |
qaProcess.DensityPlot | Creates a QA process for comparisons of density plots across multiple samples |
qaProcess.ECDFPlot | Creates a QA process for comparisons of ECDF's across multiple samples |
qaProcess.KLDistPlot | Creates a QA process for comparisons of KL Distances across multiple samples |
qaProcess.marginevents | Create QA process of type 'marginevents' |
qaProcess.timeflow | Create QA process of type 'timeflow' |
qaProcess.timeline | Create QA process of type 'timeline' |
qaProcessFrame | Class "qaProcessFrame" |
qaProcessFrame-class | Class "qaProcessFrame" |
qaProcessSummary | Class "qaProcessSummary" |
qaProcessSummary-class | Class "qaProcessSummary" |
qaReport | Create HTML report using one or several QA process function(s) |
qData | Data for demonstrating QA processes that compares dye parameters from each patient across multiple aliquots |
rangeAggregator | Class "rangeAggregator" |
rangeAggregator-class | Class "rangeAggregator" |
show-method | Class "aggregatorList" |
show-method | Class "binaryAggregator" |
show-method | Class "discreteAggregator" |
show-method | Class "factorAggregator" |
show-method | Class "numericAggregator" |
show-method | Class "qaGraph" |
show-method | Class "qaGraphList" |
show-method | Abstraction of the results of a QA process |
show-method | Class "qaProcessFrame" |
show-method | Class "qaProcessSummary" |
show-method | Class "rangeAggregator" |
show-method | Class "stringAggregator" |
stringAggregator | Class "stringAggregator" |
stringAggregator-class | Class "stringAggregator" |
txtFormatQAObject | Formats results contained in QA process objects into a data frame with appropriate row and column names |
validProcess | Validate a QAProcess object |
writeLines-method | Class "binaryAggregator" |
writeLines-method | Class "discreteAggregator" |
writeLines-method | Class "factorAggregator" |
writeLines-method | Class "numericAggregator" |
writeLines-method | Class "qaProcessSummary" |
writeLines-method | Class "rangeAggregator" |
writeLines-method | Class "stringAggregator" |
writeLines-method | Create HTML report for (lists of) qaProcess objects |
writeQAReport | Create HTML report for (lists of) qaProcess objects |
writeQATextReport | Create tab delimited text files for (lists of) qaProcess objects |