Vignettes of package chopsticks

Example of genome-wide association testing:

Introduction to chopsticks for analysis of GWA studies

snpStats Bugs:

Catalogs of Bugs in current Bioc snpMatrix and snpStats . See also the snpStats Bugs 1.3.6 and 1.5.4 versions.

An R package for analysis of whole-genome association studies:

Initial paper in "Human Heredity" (now rather out of date, but it describes the philosophy of the package)