Implements differential methylation region (DMR) detection using a multistage Markov chain Monte Carlo (MCMC) algorithm based on the alpha-skew generalized normal (ASGN) distribution. Version 0.2.0 removes the Anderson-Darling test stage, improves computational efficiency of the core ASGN and multistage MCMC routines, and adds convenience functions for summarizing and visualizing detected DMRs. The methodology is based on Yang (2025) <https://www.proquest.com/docview/3218878972>.
| Version: | 0.2.0 |
| Depends: | R (≥ 4.0.0) |
| Imports: | stats, graphics, MCMCpack (≥ 1.4-0) |
| Suggests: | kSamples, testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2025-12-20 |
| DOI: | 10.32614/CRAN.package.mmcmcBayes |
| Author: | Zhexuan Yang [aut, cre], Duchwan Ryu [aut], Feng Luan [aut] |
| Maintainer: | Zhexuan Yang <zky5198 at psu.edu> |
| BugReports: | https://github.com/zyang1919/mmcmcBayes/issues |
| License: | GPL-3 |
| URL: | https://github.com/zyang1919/mmcmcBayes |
| NeedsCompilation: | no |
| Citation: | mmcmcBayes citation info |
| Materials: | NEWS |
| CRAN checks: | mmcmcBayes results |
| Reference manual: | mmcmcBayes.html , mmcmcBayes.pdf |
| Package source: | mmcmcBayes_0.2.0.tar.gz |
| Windows binaries: | r-devel: mmcmcBayes_0.1.0.zip, r-release: mmcmcBayes_0.1.0.zip, r-oldrel: mmcmcBayes_0.1.0.zip |
| macOS binaries: | r-release (arm64): mmcmcBayes_0.1.0.tgz, r-oldrel (arm64): mmcmcBayes_0.1.0.tgz, r-release (x86_64): mmcmcBayes_0.2.0.tgz, r-oldrel (x86_64): mmcmcBayes_0.2.0.tgz |
| Old sources: | mmcmcBayes archive |
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