SAFEMCN: Network Topology Parameter Analysis with Rarefaction
Calculate network topology parameters from Operational Taxonomic Unit
(OTU) tables with customizable correlation thresholds, parallel processing
options, and visualization capabilities including trend fitting, prediction
of future sample sizes, and lag-1 autocorrelation (AR1) analysis.
Methods are based on co-occurrence network construction via correlation
thresholds and graph-theoretic metrics computed with 'igraph'.
| Version: |
1.0.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
igraph, Hmisc, parallel, ggplot2, grDevices, graphics, rlang, stats, utils |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2026-05-28 |
| DOI: |
10.32614/CRAN.package.SAFEMCN (may not be active yet) |
| Author: |
Xiaotong Xu [aut, cre],
Yue Zheng [cph] |
| Maintainer: |
Xiaotong Xu <xxt19992014 at 163.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| CRAN checks: |
SAFEMCN results |
Documentation:
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