54c018a6925aa6eb2cdcf5f74da320ed *DESCRIPTION
3a04db3117db04eb10917e83a0e1500f *LICENSE
448c8775d3ec36e7c5658f3f17f33653 *NAMESPACE
e708d475e2277c569799db561f8d756d *R/RcppExports.R
525a268d3a802e5b671056f93f45ad16 *R/eval.R
78170dc1db81d587a7eaa5cec9132b7c *R/gels.R
a7d644a4ec837e9babd5a22e0753d4a2 *R/runELA.R
d30c3170c9fd2d29096c27177e086019 *R/runSA.R
0003b45b2698d19166a50034364e65e8 *R/sample_dataset.R
c9975af16edd46b349e4ad48bb498d40 *R/utils.R
542cfddfba8ff2e4d5c2614dbdd273df *R/visualization.R
5d55966dcd9432cf5869a3584c2be9c6 *R/zzz.R
cd3e53fb394c145e6e02033962fa2629 *build/partial.rdb
803b1f7c5168429b861cab75b02a0f34 *build/vignette.rds
23b08a0ff94434146a56f75c675788a8 *data/baseabtable.rda
3e1f2576c17b1c227fed83837b3c5130 *data/basemetadata.rda
db4e299d24873d2df8edb43741743556 *inst/WORDLIST
71899b076e639772111fc8c6ff9049df *inst/doc/ELAplus-intro.R
37d191c1540a8d71df2f5336391cc8d3 *inst/doc/ELAplus-intro.Rmd
93f3db0e0a056b016502999edf3bfd36 *inst/doc/ELAplus-intro.html
2df2cd6b5a17dd263f7c7b20d8eea37a *man/Bi.Rd
406061c7d5f891e06a4e8226292ca693 *man/DisconnectivityGraph.Rd
448cbf29e96d7ba7eb06e42e23a93342 *man/ELA.Rd
19a494bd47b04cffa55ccbc395674bdb *man/ELAplus-package.Rd
901b341719764175b28252cbab021c50 *man/ELPruning.Rd
2be58d5ed6d8ca63f57b617687127d94 *man/Energy.Rd
05d8b794cc2ac97d63b88f8a72c298f3 *man/Findbp.Rd
41c430b366f57faab57c9490323660df *man/Formatting.Rd
a0dc7d2119922bc919f2f77593969e81 *man/GELAObj.Rd
80fecd1214525563f2b375c5464fedef *man/GradELA.Rd
4ae6b2d300134b3ccd5f28d359e80639 *man/GradientDescent.Rd
c0f7bc0e63aad7b3cd45ab56ed7872d6 *man/HeatBath.Rd
0f812f38c0eebc8e72a5820ae238fa32 *man/MinTippingPath.Rd
0a3e10f4a8d86f9f13d8b872f3283558 *man/OnestepHBS.Rd
c1840b45a45027a9e7e88489dbaa8303 *man/PCplot.Rd
19d8074a4f902c110a07b1cdb050e0bf *man/SSentropy.Rd
2ca445de872e0c1a36c72fac8850e95e *man/Stability.Rd
742f70c98465d29563bf1ae4f23cb014 *man/SteepestDescent.Rd
4d1f36cad5bd3b19a2cda5249aec2b7c *man/baseabtable.Rd
2b700f757fce4d8aabdc182c8ba09880 *man/basemetadata.Rd
bb4428dd4f20dd627661c99598adb085 *man/bin2id.Rd
c6b7d4f82ff12594ea183f8d3aa06955 *man/bootstrap_ELA.Rd
4d50966cb8bf9846e386f7839b022e3b *man/bootstrap_SA.Rd
ee3b8b16625dd3a2655cfe6b17c67382 *man/deltaE_histogram.Rd
1185c93b6e66936b36357040e9341422 *man/gStability.Rd
13410eebb7c306f0bd26009a444040cd *man/hb.paramgen.Rd
ce8aec8a05ab1e94a05e13e118eca70e *man/id2bin.Rd
aa25a64669e9a548d34a873a4b9e31d5 *man/plotSAtest.Rd
cb93c6c258446f56dde4b43ffa7c13f9 *man/runSA.Rd
2f4d774c369bb2315a9afc60b8034e29 *man/sa2params.Rd
f57f6e4e8adf4313b2102daed74b09cc *man/saEndpoint.Rd
727cc3c7ae50ddd850d8f0867ee6775c *man/showDG.Rd
bedc7fecdf813ee399e93582ce935c43 *man/showGELA3D.Rd
52689dbd9fd57b2614f0543c74cdd7aa *man/showIntrGraph.Rd
dc05d145c1cf5770678a431e4bed8a61 *man/showSSD.Rd
10669a6e24c691a29f3c067a318a318b *man/showSSD_ggplot.Rd
ad6558dcd02ff05f2c472cb257318aca *man/sstable.Rd
97514ad3301c998b5f82e0b4711666a1 *man/tptable.Rd
11821921fb45c3c9ee3ee89cb5132287 *src/ELA_functions.cpp
326959e8e37ab28d7109d1c24916c5ef *src/Makevars
326959e8e37ab28d7109d1c24916c5ef *src/Makevars.win
a65258ce2a4876cd142cc43f35818fe5 *src/RcppExports.cpp
37d191c1540a8d71df2f5336391cc8d3 *vignettes/ELAplus-intro.Rmd
e8da93935f2c716394608047ff51fd5c *vignettes/data/abundance_table.csv
5fb438314754198632128e98d92f05be *vignettes/data/sample_metadata.csv
622df9d991255a2a5852f1d457eba2a5 *vignettes/figures/DG_manual.png
7fd53e76043427d984b9cdbab1167196 *vignettes/figures/DGexample.png
8748e722e1197b7fd72e82df0e795adf *vignettes/figures/DGexample_pruned.png
75055b59d5d2c14546cc5405a070af1d *vignettes/figures/DGexample_pval.png
9dfc149dea9ed8ee47eb9b33f6cfd291 *vignettes/figures/DGexample_pval_pruned.png
0f49483004b532cb072afdd7ccb751cc *vignettes/figures/EPMEM_abstract.png
0c90ab4c9f3c8016e1c1a1c5b99710f7 *vignettes/figures/EPMEM_abstract2.png
ba2239e821f93f7dd0bf34a1364d5681 *vignettes/figures/GELA3D.png
7c708838caae7a519765bd3622eda161 *vignettes/figures/IntrGraph.png
11a8be103239379a52714261e5c9fc9f *vignettes/figures/ParameterMatrix.png
3494a9b917c5314860d58e4b00a41c60 *vignettes/figures/SSD.png
06ba8637a88e1ed04de151f2c5bf312a *vignettes/figures/SSD_ggplot.png
43bd5b8fda3b1682c3fd600dd3eeb094 *vignettes/figures/SSD_pruned.png
1adc5305bd4f82c58bc3461019efe346 *vignettes/figures/deltaE_hist.png
bde6892d37a34ccf12fb126b9ad28bae *vignettes/figures/deltaE_scheme.png
003df96873cad3e813c1aa19db9ec2f7 *vignettes/figures/plotSAtest.png
ada9fa1ab699664da6ef5625a8e6390c *vignettes/vignette.css
