Statistical Genetics Data Objects and Loaders

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Documentation for package ‘statgen’ version 0.3.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

statgen-package	Statistical Genetics Data Objects and Loaders
a1	ReferencePanel objects
a1freq	LD panel loading, preparation, and operations
a1_hash64	ReferencePanel objects
a2	ReferencePanel objects
a2_hash64	ReferencePanel objects
annomat	AnnotationPanel objects
annonames	AnnotationPanel objects
beta_vec	Sumstats objects
bp	ReferencePanel objects
chr	ReferencePanel objects
create_annotation	AnnotationPanel objects
create_annotations	AnnotationPanel objects
create_sumstats	Sumstats objects
default_chrX_sex	LD panel loading, preparation, and operations
eaf_vec	Sumstats objects
fast_prune	LD panel loading, preparation, and operations
father_id	GenotypePanel objects
fetch_genotypes	GenotypePanel objects
fetch_genotypes_int8	GenotypePanel objects
fid	GenotypePanel objects
get_verbosity	Get or Set Runtime Verbosity
iid	GenotypePanel objects
info_vec	Sumstats objects
is_female	GenotypePanel objects
is_male	GenotypePanel objects
is_object_compatible	ReferencePanel objects
is_present	Sumstats objects
is_single_nucleotide_variant	ReferencePanel objects
is_strand_ambiguous	ReferencePanel objects
is_subject_present	GenotypePanel objects
load_annotations	AnnotationPanel objects
load_annotations_cache	AnnotationPanel objects
load_genotype	GenotypePanel objects
load_genotype_cache	GenotypePanel objects
load_ld	LD panel loading, preparation, and operations
load_ld_reference	LD panel loading, preparation, and operations
load_reference	ReferencePanel objects
load_reference_cache	ReferencePanel objects
load_sumstats	Sumstats objects
load_sumstats_cache	Sumstats objects
logpvec	Sumstats objects
mother_id	GenotypePanel objects
multiply_r2	LD panel loading, preparation, and operations
num_annot	AnnotationPanel objects
num_sample	GenotypePanel objects
num_snp	ReferencePanel objects
nvec	Sumstats objects
ploidy_female	GenotypePanel objects
ploidy_male	GenotypePanel objects
prepare_ld_npz_for_r	LD panel loading, preparation, and operations
reference	LD panel loading, preparation, and operations
save_annotations_cache	AnnotationPanel objects
save_cache	ReferencePanel objects
save_genotype_cache	GenotypePanel objects
save_reference_cache	ReferencePanel objects
save_sumstats_cache	Sumstats objects
select_annotations	AnnotationPanel objects
select_shards	ReferencePanel objects
set_verbosity	Get or Set Runtime Verbosity
sex	GenotypePanel objects
se_vec	Sumstats objects
shards	ReferencePanel objects
shard_offsets	ReferencePanel objects
snp	ReferencePanel objects
source_layout	GenotypePanel objects
source_row0	GenotypePanel objects
union_annotations	AnnotationPanel objects
validate_checksums	ReferencePanel objects
validate_ld_distribution	LD panel loading, preparation, and operations
version	Return the statgen Package Version
zvec	Sumstats objects