Client for the 'UniTCM' Traditional Chinese Medicine Platform
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Documentation for package ‘unitcm’ version 0.1.2
Help Pages
| aggregated_target2np | Aggregated Target2NP view across data sources |
| as_igraph | Convert a NetVis graph response to igraph |
| as_tidygraph | Convert a NetVis graph response to tidygraph |
| autocomplete_disease | Autocomplete disease names (MIDAS) |
| batch_target2np | Batch query Target2NP by identifier list |
| build_formula_herb_network | Build a Formula-Herb network |
| build_hct_network | Build an Herb-Compound-Target network |
| clear_api_key | Clear the UniTCM API Key |
| clear_unitcm_token | Clear the UniTCM API token |
| convert_gene_ids | Convert gene identifiers (MIDAS) |
| detect_communities | Detect communities in a graph |
| export_compounds | Export compounds to CSV |
| export_compound_module | Export compound data by module |
| export_datasets | Export datasets to CSV |
| export_herbs | Export herbs to CSV |
| export_herb_compounds | Export herb compounds to CSV |
| export_ontology | Export the TCM ontology |
| fetch_compound_facets | Get compound facets and statistics |
| fetch_dataset_facets | Get dataset facets |
| fetch_dataset_stats | Get TCMomics database statistics |
| fetch_disease_tree | Get the ICD-11 disease classification tree |
| fetch_herb_facets | Get herb filter facets |
| fetch_home_stats | Get homepage statistics |
| fetch_latest_submissions | Get latest submissions |
| fetch_mechanism_filters | Get mechanism filter options |
| fetch_midas_sources | Get MIDAS data sources |
| fetch_midas_stats | Get MIDAS statistics |
| fetch_netvis_stats | Get NetVis network statistics |
| fetch_omics_type_stats | Get omics type statistics |
| fetch_ontology_stats | Fetch ontology statistics |
| fetch_ontology_tree | Fetch the TCM ontology tree |
| fetch_target2np_filters | Fetch Target2NP filter options |
| fetch_target2np_stats | Fetch Target2NP database statistics |
| fetch_tcm_classification_stats | Get TCM classification statistics |
| fetch_transcriptome_filters | Get transcriptome filter options |
| fetch_transcriptome_stats | Get Transcriptome Hub statistics |
| find_path | Find shortest path between two nodes |
| flatten_response | Flatten a nested API response to a tibble |
| get_analysis_data | Get analysis data for a transcriptome dataset |
| get_analysis_modules | List available analysis modules for a dataset |
| get_api_key | Get the UniTCM API Key |
| get_base_url | Get the UniTCM API base URL |
| get_compound | Get a single compound by ID |
| get_compound_admet | Get ADMET predictions for a compound |
| get_compound_herbs | Get herbs containing a compound |
| get_compound_targets | Get predicted targets for a compound |
| get_dataset | Get a single dataset by submission ID |
| get_formula | Get a single formula by order ID |
| get_formula_doses | Get herb doses for a formula |
| get_herb | Get a single herb by ID |
| get_herb_compounds | Get compounds for a herb |
| get_mechanism | Get a single mechanism term by ID |
| get_neighbors | Get neighbors of a node |
| get_node_detail | Get node detail |
| get_node_metrics | Get node metrics |
| get_ontology_ancestors | Get ancestors of an ontology entity |
| get_ontology_by_level | Get ontology entities by level |
| get_ontology_children | Get children of an ontology entity |
| get_ontology_descendants | Get all descendants of an ontology entity |
| get_ontology_entity | Get a TCM ontology entity |
| get_similar_datasets | Get similar datasets |
| get_subgraph | Get subgraph for a set of nodes |
| get_target2np | Get a single Target2NP interaction record |
| get_term | Get a single term by ID |
| get_transcriptome | Get a single transcriptome dataset |
| get_unitcm_token | Get the UniTCM API token |
| list_book_sources | List book sources |
| list_dosage_forms | List dosage forms |
| list_ontology_categories | List top-level ontology categories |
| list_origin_sources | List origin sources |
| list_term_categories | List term categories |
| list_term_sources | List term sources |
| plot_compound_radar | Plot compound physicochemical radar chart |
| plot_enrichment | Plot enrichment results |
| plot_network | Plot a network graph |
| query_disease_enrichment | Disease enrichment analysis (MIDAS) |
| query_disease_genes | Query disease-to-gene associations (MIDAS) |
| query_disease_intersection | Find disease intersection (MIDAS) |
| query_gene_diseases | Query gene-to-disease associations (MIDAS) |
| query_source_comparison | Compare gene-disease sources (MIDAS) |
| search_compounds | Search compounds in the Ingredient Explorer |
| search_datasets | Search TCMomics datasets |
| search_formulas | Search formulas in the Disease-Formula Atlas |
| search_herbs | Search herbs in the Herb Explorer |
| search_mechanisms | Search terms molecular mechanisms |
| search_netvis | Search NetVis nodes |
| search_ontology | Search the TCM Ontology |
| search_ontology_mapping | Search ontology external mapping |
| search_target2np | Search Target2NP compound-target interactions |
| search_target2np_drugclip | Search DrugCLIP predicted compound-target interactions |
| search_target2np_sea | Search SEA (ChEMBL similarity) predicted compound-target interactions |
| search_terms | Search TCM bilingual corpus terms |
| search_transcriptomes | Search transcriptome datasets |
| set_api_key | Set a UniTCM API Key |
| set_base_url | Set the UniTCM API base URL |
| set_unitcm_token | Set a UniTCM API token |
| target2np_multi_source_summary | Multi-source summary for a Target2NP query |
| unitcm_cache_clear | Clear unitcm cache |