dynamicGraph

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Documentation for package `dynamicGraph' version 0.1.7.0

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A B C D E F G I L M N O P R S T V W

-- A --

addToPopups Class "dg.Vertex"
addToPopups,dg.Node-method Class "dg.Node"
ancestors Class "dg.Block"
ancestors,dg.Block-method Class "dg.Block"
ancestors,dg.Vertex-method Class "dg.Vertex"
ancestors<-,dg.Block-method Class "dg.Block"
ancestors<-,dg.Vertex-method Class "dg.Vertex"
asDataFrame Class "dg.list", "dg.NodeList", and "dg.EdgeList"
asDataFrame,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"

-- B --

blockEdgeList Class "dg.BlockEdgeList": The block edge list
blockindex Class "dg.Vertex"
blockindex,dg.Vertex-method Class "dg.Vertex"
blockindex<-,dg.Vertex-method Class "dg.Vertex"
Blockindices Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Blockindices,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
blockList Class "dg.BlockList": The block list
blockTreeToList Extract the list of blocks from a block tree

-- C --

Closed The block tree
closed Class "dg.Block"
closed,dg.Block-method Class "dg.Block"
Closed,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
closed<-,dg.Block-method Class "dg.Block"
Closed<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
color Class "dg.Vertex"
color,dg.Node-method Class "dg.Node"
color<-,dg.Node-method Class "dg.Node"
Colors Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Colors,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Colors<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"

-- D --

dash Class "dg.VertexEdge"
dash,dg.Edge-method Class "dg.Edge"
dash<-,dg.Edge-method Class "dg.Edge"
Dashes Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Dashes,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Dashes<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
descendants Class "dg.Block"
descendants,dg.Block-method Class "dg.Block"
descendants,dg.Vertex-method Class "dg.Vertex"
descendants<-,dg.Block-method Class "dg.Block"
descendants<-,dg.Vertex-method Class "dg.Vertex"
dg.Block Class "dg.Block"
dg.Block-class Class "dg.Block"
dg.BlockEdge Class "dg.BlockEdge"
dg.BlockEdge-class Class "dg.BlockEdge"
dg.BlockEdgeList-class Class "dg.BlockEdgeList": The block edge list
dg.BlockList-class Class "dg.BlockList": The block list
dg.ContinuousVertex-class Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
dg.DashedEdge Class "dg.VertexEdge"
dg.DashedEdge-class Class "dg.VertexEdge"
dg.DiscreteGenerator-class Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
dg.DiscreteVertex-class Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
dg.DottedEdge Class "dg.VertexEdge"
dg.DottedEdge-class Class "dg.VertexEdge"
dg.DoubleArrowEdge Class "dg.VertexEdge"
dg.DoubleArrowEdge-class Class "dg.VertexEdge"
dg.DoubleConnectedEdge Class "dg.VertexEdge"
dg.DoubleConnectedEdge-class Class "dg.VertexEdge"
dg.Edge Class "dg.VertexEdge"
dg.Edge-class Class "dg.Edge"
dg.EdgeList-class Class "dg.list", "dg.NodeList", and "dg.EdgeList"
dg.ExtraEdge Class "dg.ExtraEdge"
dg.ExtraEdge-class Class "dg.ExtraEdge"
dg.ExtraEdgeList-class Class "dg.ExtraEdgeList": The extra edge list
dg.FactorEdge Class "dg.FactorEdge"
dg.FactorEdge-class Class "dg.FactorEdge"
dg.FactorEdgeList-class Class "dg.FactorEdgeList": The factor edge list
dg.FactorVertex Class "dg.FactorVertex"
dg.FactorVertex-class Class "dg.FactorVertex"
dg.FactorVertexList-class Class "dg.FactorVertexList": The factor vertex list
dg.Generator-class Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
dg.LinearGenerator-class Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
dg.list-class Class "dg.list", "dg.NodeList", and "dg.EdgeList"
dg.Model-class Class "dg.Model"
dg.Node Class "dg.Vertex"
dg.Node-class Class "dg.Node"
dg.NodeList-class Class "dg.list", "dg.NodeList", and "dg.EdgeList"
dg.OrdinalVertex-class Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
dg.QuadraticGenerator-class Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
dg.Test-class Class "dg.Test"
dg.TextVertex-class Class "dg.TextVertex"
dg.TripleConnectedEdge Class "dg.VertexEdge"
dg.TripleConnectedEdge-class Class "dg.VertexEdge"
dg.Vertex Class "dg.Vertex"
dg.Vertex-class Class "dg.Vertex"
dg.VertexEdge Class "dg.VertexEdge"
dg.VertexEdge-class Class "dg.VertexEdge"
dg.VertexEdgeList-class Class "dg.VertexEdgeList": The edge list
dg.VertexList-class Class "dg.VertexList": The vertex list
draw Class "dg.Vertex"
draw,dg.Block-method Class "dg.Block"
draw,dg.ContinuousVertex-method Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
draw,dg.DiscreteGenerator-method Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
draw,dg.DiscreteVertex-method Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
draw,dg.Edge-method Class "dg.Edge"
draw,dg.Generator-method Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
draw,dg.LinearGenerator-method Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
draw,dg.OrdinalVertex-method Classses "dg.DiscreteVertex", "dg.ContinuousVertex", and "dg.OrdinalVertex"
draw,dg.QuadraticGenerator-method Classses "dg.Generator", "dg.DiscreteGenerator", "dg.Linear"-"Generator", and "dg.QuadraticGenerator"
draw,dg.TextVertex-method Class "dg.TextVertex"
drawModel Draw the dynamicGraph window and slaves
DynamicGraph Simple interface to dynamicGraph
dynamicGraph Dynamic Graph
DynamicGraph-class Class "DynamicGraph"
dynamicGraphMain Dynamic Graph
DynamicGraphModel-class Class "DynamicGraphModel"
DynamicGraphView-class Class "DynamicGraphView"

-- E --

edgeClasses Valid edge classes
EssentialDynamicGraphView-class Class "DynamicGraphView"
extraEdgeList Class "dg.ExtraEdgeList": The extra edge list

-- F --

factorClasses Valid factor vertex classes
FactorDynamicGraphView-class Class "DynamicGraphView"
factorEdgeList Class "dg.FactorEdgeList": The factor edge list
factorVertexList Class "dg.FactorVertexList": The factor vertex list

-- G --

graphComponents Class "dg.Model"
graphComponents,dg.Model-method Class "dg.Model"

-- I --

index Class "dg.Vertex"
index,dg.Block-method Class "dg.Block"
index,dg.FactorVertex-method Class "dg.FactorVertex"
index,dg.Vertex-method Class "dg.Vertex"
index<-,dg.Block-method Class "dg.Block"
index<-,dg.FactorVertex-method Class "dg.FactorVertex"
index<-,dg.Vertex-method Class "dg.Vertex"
Indices Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Indices,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"

-- L --

label Class "dg.Vertex"
label,dg.Edge-method Class "dg.Edge"
label,dg.Node-method Class "dg.Node"
label,dg.Test-method Class "dg.Test"
label<-,dg.Edge-method Class "dg.Edge"
label<-,dg.Node-method Class "dg.Node"
labelPosition Class "dg.Vertex"
labelPosition,dg.Node-method Class "dg.Node"
labelPosition<-,dg.Node-method Class "dg.Node"
LabelPositions Class "dg.list", "dg.NodeList", and "dg.EdgeList"
LabelPositions,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
LabelPositions<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Labels Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Labels,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Labels<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"

-- M --

menu Draw the dynamicGraph window and slaves
modalDialog Modal dialog window for returning a text string
modifyModel Class "dg.Model"
modifyModel,dg.Model-method Class "dg.Model"
MoralDynamicGraphView-class Class "DynamicGraphView"

-- N --

name Class "dg.Vertex"
name,dg.Block-method Class "dg.Block"
name,dg.Edge-method Class "dg.Edge"
name,dg.Vertex-method Class "dg.Vertex"
name<-,dg.Vertex-method Class "dg.Vertex"
Names Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Names,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Names<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
nameToVertexIndex The indices of vertices
newBlock Class "dg.Block"
newBlockEdge Class "dg.BlockEdge"
newDefaultModelObject Class "dg.Model"
newDefaultTestObject Class "dg.Test"
newExtraEdge Class "dg.ExtraEdge"
newFactor Class "dg.FactorVertex"
newFactorEdge Class "dg.FactorEdge"
newVertex Class "dg.Vertex"
newVertexEdge Class "dg.VertexEdge"
NodeAncestors The block tree
NodeAncestors,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
NodeAncestors<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
NodeDescendants The block tree
NodeDescendants,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
NodeDescendants<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
NodeIndices Class "dg.list", "dg.NodeList", and "dg.EdgeList"
nodeIndices Class "dg.FactorVertex"
nodeIndices,dg.Edge-method Class "dg.Edge"
nodeIndices,dg.FactorVertex-method Class "dg.FactorVertex"
NodeIndices,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
nodeIndices<-,dg.FactorVertex-method Class "dg.FactorVertex"
nodeIndicesOfEdge Class "dg.VertexEdge"
nodeIndicesOfEdge,dg.Edge-method Class "dg.Edge"
nodeIndicesOfEdge<-,dg.Edge-method Class "dg.Edge"
NodeTypes Class "dg.list", "dg.NodeList", and "dg.EdgeList"
NodeTypes,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
nodeTypesOfEdge Class "dg.VertexEdge"
nodeTypesOfEdge,dg.BlockEdge-method Class "dg.BlockEdge"
nodeTypesOfEdge,dg.ExtraEdge-method Class "dg.ExtraEdge"
nodeTypesOfEdge,dg.FactorEdge-method Class "dg.FactorEdge"
nodeTypesOfEdge,dg.VertexEdge-method Class "dg.VertexEdge"

-- O --

Oriented Class "dg.list", "dg.NodeList", and "dg.EdgeList"
oriented Class "dg.VertexEdge"
oriented,dg.BlockEdge-method Class "dg.BlockEdge"
Oriented,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
oriented,dg.VertexEdge-method Class "dg.VertexEdge"
oriented<-,dg.BlockEdge-method Class "dg.BlockEdge"
Oriented<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
oriented<-,dg.VertexEdge-method Class "dg.VertexEdge"

-- P --

position Class "dg.Vertex"
position,dg.Block-method Class "dg.Block"
position,dg.Vertex-method Class "dg.Vertex"
position<-,dg.Block-method Class "dg.Block"
position<-,dg.Vertex-method Class "dg.Vertex"
Positions Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Positions,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Positions<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
propertyDialog Class "dg.Vertex"
propertyDialog,dg.Edge-method Class "dg.Edge"
propertyDialog,dg.Node-method Class "dg.Node"

-- R --

redrawGraphWindow Draw the dynamicGraph window and slaves
redrawView Draw the dynamicGraph window and slaves
returnBlockEdgeList Class "dg.BlockEdgeList": The block edge list
returnEdgeList Class "dg.VertexEdgeList": The edge list
returnExtraEdgeList Class "dg.ExtraEdgeList": The extra edge list
returnFactorEdgeList Class "dg.FactorEdgeList": The factor edge list
returnFactorVerticesAndEdges Class "dg.FactorVertexList": The factor vertex list
returnGraphComponents Class "dg.Model"
returnGraphComponents,dg.Model-method Class "dg.Model"
returnVertexList Class "dg.VertexList": The vertex list

-- S --

selectDialog Dialog window for selection between items
setBlocks Class "dg.BlockList": The block list
setGraphComponents Class "dg.Model"
setGraphComponents,dg.Model-method Class "dg.Model"
setTreeBlocks The block tree
show,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
show,DynamicGraph-method Class "DynamicGraph"
show,DynamicGraphModel-method Class "DynamicGraphModel"
show,DynamicGraphView-method Class "DynamicGraphView"
SimpleDynamicGraphView-class Class "DynamicGraphView"
Str Class "DynamicGraph"
Str,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Str,dg.Model-method Class "dg.Model"
Str,DynamicGraph-method Class "DynamicGraph"
Str,DynamicGraphModel-method Class "DynamicGraphModel"
Str,DynamicGraphView-method Class "DynamicGraphView"
Str,integer-method Class "DynamicGraph"
Str,list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Str,NULL-method Class "DynamicGraph"
Str,numeric-method Class "DynamicGraph"
Strata Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Strata,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Strata<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
stratum Class "dg.Vertex"
stratum,dg.Block-method Class "dg.Block"
stratum,dg.Vertex-method Class "dg.Vertex"
stratum<-,dg.Block-method Class "dg.Block"
stratum<-,dg.Vertex-method Class "dg.Vertex"

-- T --

testEdge Class "dg.Model"
testEdge,dg.Model-method Class "dg.Model"

-- V --

validEdgeClasses Valid edge classes
validFactorClasses Valid factor vertex classes
validVertexClasses Valid vertex classes
validViewClasses Valid view classes
vertexClasses Valid vertex classes
vertexEdgeList Class "dg.VertexEdgeList": The edge list
vertexEdges Class "dg.Model"
vertexEdges,dg.Model-method Class "dg.Model"
vertexEdges<-,dg.Model-method Class "dg.Model"
vertexList Class "dg.VertexList": The vertex list
viewClasses Valid view classes
Visible Class "dg.list", "dg.NodeList", and "dg.EdgeList"
visible Class "dg.Vertex"
visible,dg.Block-method Class "dg.Block"
Visible,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
visible,dg.Vertex-method Class "dg.Vertex"
visible<-,dg.Block-method Class "dg.Block"
Visible<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
visible<-,dg.Vertex-method Class "dg.Vertex"

-- W --

width Class "dg.VertexEdge"
width,dg.Edge-method Class "dg.Edge"
width,dg.Test-method Class "dg.Test"
width<-,dg.Edge-method Class "dg.Edge"
Widths Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Widths,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"
Widths<-,dg.list-method Class "dg.list", "dg.NodeList", and "dg.EdgeList"