Package: aaMI
Version: 1.0-0
Date: 2005-06-21
Title: Mutual information for protein sequence alignments
Author: Kurt Wollenberg <kurt.wollenberg@gmail.com>
Maintainer: Kurt Wollenberg <kurt.wollenberg@gmail.com>
Depends: R (>= 2.0.0)
Description: This package contains four functions. read.FASTA reads in
        a FASTA-format alignment file and parses it into a data frame.
        read.CX reads in a ClustalX .aln-format file and parses it
        into a data frame. read.Gdoc reads in a GeneDoc .msf-format
        file and parses it into a data frame. The alignment data frame
        returned by each of these functions has the sequence IDs as
        the row names and each site in the alignment is a column in
        the data frame. The program aaMI calculates the mutual
        information between each pair of sites (columns) in the
        protein sequence alignment data frame.
License: GPL version 2 or newer
Packaged: Fri Jun 24 11:43:01 2005; kwollenberg
Built: R 2.1.1; ; 2005-07-13 11:41:59; unix
