SeqAcnucWeb {seqinr}R Documentation

Sequence coming from an ACNUC data bases located on the web

Description

as.SeqAcnucWeb is called by many functions, for instance by query.SeqAcnucWeb, and should not directly be called by the user. It creates an object of class SeqAcnucWeb. is.SeqAcnucWeb returns TRUE if the object is of class SeqAcnucWeb.

Usage

as.SeqAcnucWeb(object,socket=F)
is.SeqAcnucWeb(object)

Arguments

object a string giving the name of a sequence presents in the data base
socket an object of class socket

Value

as.SeqAcnucWeb returns an object sequence of class SeqAcnucWeb

Author(s)

D. Charif

References

  To have an overview of the seqinR's functionnality, please consult this vignette: Charif, D., Lobry, J.R. (2005) SeqinR: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis. Springer Verlag, Biological and Medical Physics/Biomedical Series, in preparation.

Examples

  ## Not run: s = choosebank.socket("genbank")
  ## Not run: query.socket(s$socket,"felis","sp=felis catus et t=cds et o=mitochondrion")
  ## Not run: is.SeqAcnucWeb(felis$req[[1]])
[Package seqinr version 1.0-2 Index]