SeqAcnucWeb              package:seqinr              R Documentation

_S_e_q_u_e_n_c_e _c_o_m_i_n_g _f_r_o_m _a_n _A_C_N_U_C _d_a_t_a _b_a_s_e_s _l_o_c_a_t_e_d _o_n _t_h_e _w_e_b

_D_e_s_c_r_i_p_t_i_o_n:

     'as.SeqAcnucWeb' is called by many functions, for instance by
     'query.SeqAcnucWeb', and should not directly be called by the
     user. It creates an object of class 'SeqAcnucWeb'. 
     'is.SeqAcnucWeb' returns TRUE if the object is of class
     'SeqAcnucWeb'.

_U_s_a_g_e:

     as.SeqAcnucWeb(object,socket=F)
     is.SeqAcnucWeb(object)

_A_r_g_u_m_e_n_t_s:

  object: a string giving the name of a sequence presents in the data
          base

  socket: an object of class 'socket'

_V_a_l_u_e:

     'as.SeqAcnucWeb' returns an object sequence of class 'SeqAcnucWeb'

_A_u_t_h_o_r(_s):

     D. Charif

_R_e_f_e_r_e_n_c_e_s:

      To have an overview of the seqinR's functionnality, please
     consult this vignette:  Charif, D., Lobry, J.R. (2005) SeqinR: a
     contributed package to the R project for statistical computing
     devoted to biological sequences retrieval and analysis. Springer
     Verlag, _Biological and Medical Physics/Biomedical Series_, in
     preparation. 

_E_x_a_m_p_l_e_s:

       ## Not run: s = choosebank.socket("genbank")
       ## Not run: query.socket(s$socket,"felis","sp=felis catus et t=cds et o=mitochondrion")
       ## Not run: is.SeqAcnucWeb(felis$req[[1]])

