Entry: pre.hapassoc
Aliases: pre.hapassoc
Keywords: methods
Description: Pre-process the data before fitting it with hapassoc
URL: ../../../library/hapassoc/html/PreHap.html

Entry: hapassoc-internal
Aliases: EMnull EMnullPHASE EMvar IPhi IPhiGamma IPhiGaussian SPhi SPhiGamma SPhiGaussian codeHaploDM getHaplos getPhenos handleMissings isHetero isIn isMissing isMultiHetero makeHaploLab makeHaploLabN mlPhi mlPhiGamma momentPhiGamma pYgivenX RecodeHaplos
Keywords: internal
Description: Internal hapassoc functions
URL: ../../../library/hapassoc/html/hapassoc-internal.html

Entry: hapassoc
Aliases: hapassoc
Keywords: methods
Description: hapassoc algorithm to fit maximum likelihood estimates of trait associations with SNP haplotypes
URL: ../../../library/hapassoc/html/hapassoc.html

Entry: hypoDat
Aliases: hypoDat
Keywords: datasets
Description: Simulated data for a hypothetical binary trait
URL: ../../../library/hapassoc/html/hypoDat.html

Entry: summary.hapassoc
Aliases: summary.hapassoc
Keywords: methods
Description: Summarize results of the hapassoc function
URL: ../../../library/hapassoc/html/summaryHap.html
