Package: ape
Version: 1.4
Date: 2004-12-20
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis <paradis@isem.univ-montp2.fr>, Korbinian
        Strimmer <strimmer@stat.uni-muenchen.de>, Julien Claude
        <claude@isem.univ-montp2.fr>, Gangolf Jobb
        <gangolf.deletethis@treefinder.de>, Rainer Opgen-Rhein
        <opgen@stat.uni-muenchen.de>, Julien Dutheil
        <julien.dutheil@univ-montp2.fr>, Yvonnick Noel
        <noel@univ-lille3.fr>, Ben Bolker <bolker@zoo.ufl.edu>
Maintainer: Emmanuel Paradis <paradis@isem.univ-montp2.fr>
Depends: R (>= 2.0.0)
Suggests: gee, nlme, lattice
ZipData: no
Description: Ape provides functions for reading, writing, plotting,
        and manipulating phylogenetic trees, analyses of comparative
        data in a phylogenetic framework, analyses of diversification
        and macroevolution, computing distances from allelic and
        nucleotide data, reading nucleotide sequences, and several
        tools such as Mantel's test, computation of minimum spanning
        tree, the population parameter theta based on various
        approaches, generalized skyline plots, estimation of absolute
        evolutionary rates and clock-like trees using non-parametric
        rate smoothing, conversion of APE trees to and from hclust
        objects and for classifying genes in trees using the
        Klastorin-Misawa-Tajima approach.
License: GPL version 2 or newer
Packaged: Thu Dec 23 16:08:33 2004; PARADYS
Built: R 2.0.1; powerpc-apple-darwin6.8; 2005-04-19 00:41:15; unix
