bacteria                package:ade4                R Documentation

_G_e_n_o_m_e_s _o_f _4_3 _B_a_c_t_e_r_i_a

_D_e_s_c_r_i_p_t_i_o_n:

     'bacteria' is a list containing 43 species and genomic
     informations : codons, amino acid and bases.

_U_s_a_g_e:

     data(bacteria)

_F_o_r_m_a_t:

     This list contains the following objects:

     _c_o_d_e is a factor with the amino acid names for each codon. 

     _e_s_p_c_o_d_o_n is a data frame 43 species 64 codons. 

     _e_s_p_a_a is a data frame 43 species 21 amino acid. 

     _e_s_p_b_a_s_e is a data frame 43 species 4 bases. 

_S_o_u_r_c_e:

     Data prepared by J. Lobry lobry@biomserv.univ-lyon1.fr starting
     from:
      <URL: http://www.tigr.org/tdb/mdb/mdbcomplete.html>

_E_x_a_m_p_l_e_s:

     data(bacteria)
     names(bacteria$espcodon)
     names(bacteria$espaa)
     names(bacteria$espbase)
     sum(bacteria$espcodon) # 22,619,749 codons
     scatter.coa(dudi.coa(bacteria$espcodon, scann = FALSE), 
         posi = "bottom")

