plotmeltingcurve         package:phyloarray         R Documentation

_P_l_o_t _m_e_l_t_i_n_g _c_u_r_v_e

_D_e_s_c_r_i_p_t_i_o_n:

     Make a plot of a melting curve.

_U_s_a_g_e:

       plotmeltingcurve(datalist, dye="R", probe=NULL)

_A_r_g_u_m_e_n_t_s:

datalist: An object of type 'phyloarray'

     dye: The dye of which the background should be plotted, i.e. "R"
          or "G".

   probe: The name of the probe ('Probename') which should be plotted.

_D_e_t_a_i_l_s:

     At present date, only the signal/background ratio is calculated
     and plotted. In the future, other methods may be included.

     The probe-ID's to be plotted are taken from the list of probes. If
     more than one probe has the same 'Probename', all the probes are
     plotted in the figure, using different point character (from type
     1 to ...). Each next column, i.e. ID of probe of the same
     'Probename' (match, mismatch, ...) is plotted using a different
     color, going from color 1 to ... See 'par' and 'plot' for more
     information about characters and colors.

_V_a_l_u_e:

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Kurt Sys (kurt.sys@advalvas.be)

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'Scandataraw' 'Phylodata'

     'plot' 'lines' 'par'

_E_x_a_m_p_l_e_s:

       # load data this-is-escaped-codenormal-bracket36bracket-normal, i.e. this-is-escaped-codenormal-bracket37bracket-normal
       data(Phylodata)

       # for calculation of histogram cutoffs for good/bad spots
       # scans <- histcutoffs(scans)
       #
       # if background calculation is necessary
       # scans <- calcbackgroud(scans)

       plotmeltingcurve(scans, probe="Bacteria1")

