minfiData

DOI: 10.18129/B9.bioc.minfiData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see minfiData.

Example data for the Illumina Methylation 450k array

Bioconductor version: 3.9

Data from 6 samples across 2 groups from 450k methylation arrays.

Author: Kasper Daniel Hansen, Martin Aryee, Winston Timp

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("minfiData")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("minfiData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 0.30.0
License Artistic-2.0
Depends R (>= 3.3.0), minfi(>= 1.21.2), IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me methylationArrayAnalysis
Imports Me
Suggests Me bigmelon, conumee, CopyNeutralIMA, ENmix, funtooNorm, Harman, mCSEA, MEAL, MethylAid, MethylAidData, methyvim, minfi, missMethyl, MultiDataSet, shinyMethyl, skewr
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minfiData_0.30.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/minfiData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minfiData
Package Short Url https://bioconductor.org/packages/minfiData/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: