CopyhelpeR

DOI: 10.18129/B9.bioc.CopyhelpeR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CopyhelpeR.

Helper files for CopywriteR

Bioconductor version: 3.9

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")

 

PDF	R Script	CopyhelpeR
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, GenomicSequence, Homo_sapiens
Version	1.16.0
License	GPL-2
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	CopywriteR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CopyhelpeR_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url	https://bioconductor.org/packages/CopyhelpeR/
Package Downloads Report	Download Stats