BSgenome.Hsapiens.UCSC.hg19

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: 3.9

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
LinkingTo
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me annotation, BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, sequencing, traseR, variants
Imports Me appreci8R, BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, decompTumor2Sig, MADSEQ, RareVariantVis, RCAS, TCGAWorkflow, trena
Suggests Me AneuFinder, ArrayTV, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CRISPRseek, customProDB, DNAshapeR, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GUIDEseq, Gviz, h5vc, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, PGA, plyranges, qsea, R453Plus1Toolbox, Rariant, REMP, rGADEM, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, StructuralVariantAnnotation, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, YAPSA
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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