# Version 1.3.3 - Fixed examples in `expressionsTCGA` that broke after changes in dplyr, while moving to `tibble`s. # Version 1.1.15 - New functions `heatmapTCGA`, `boxplotTCGA`, `kmTCGA`, `pcaTCGA`, `theme_RTCGA` for plotting [https://rtcga.github.io/RTCGA/Visualizations.html](https://rtcga.github.io/RTCGA/Visualizations.html) - New functions `mutationsTCGA`, `expressionsTCGA`, `survivalTCGA` for data manipulations. - New website [https://rtcga.github.io/RTCGA/](https://rtcga.github.io/RTCGA/) # Version 1.1 - New parameter `allDataSets` for `downloadTCGA` that allows to download all files matching string in the `dataSet` parameter. - New documentation page `?datasetsTCGA`. - `readTCGA` has now new `method` for below files - `RPPA` (reverse phase protein array), - `mRNA` (Merge transcriptome agilent), - `miRNASeq` - `methylation` (methylation datasets) - `datasetsTCGA` documentation has been extended with new datasets for `rppa` and `mrna` - `downloadTCGA` now gives a warning when more than one file matches `dataSet` parameter, and downloads the first matched dataset without `FFPE` in the name. If all matching datasets have `FFPE` in the name then the first of them is downloaded. - `checkTCGA` now downloads also sizes with datasets names when one specifies `what` parameter to `DatSets`. - Updated tests for `checkTCGA` - Added new `installTCGA` function that can install all packages from RTCGA family. - Added new `convertTCGA` function that converts `data.frame`s from RTCGA family to Bioconductor classes. - New examples in `readTCGA` function documentation concerning the following datasets: - `methylation` - `RPPA` - `mRNA` - `miRNASeq` - `isoforms` # Version 1.0 functions - readTCGA - infoTCGA - checkTCGA - downloadTCGA