------------------------ CHANGES IN VERSION 1.3.1 ---------------------- CHANGES SINCE LAST TIME o A new citation is added. o Several bugs are corrected. ------------------------ CHANGES IN VERSION 0.99.17 ---------------------- CHANGES SINCE LAST TIME o A new function, compareDMCs() is added for plotting DMCs and average predicted methylation for for group comparision. o The manhattanDMCs() function is modified to plot regions of interests. ------------------------ CHANGES IN VERSION 0.99.16 ---------------------- CHANGES SINCE LAST TIME o The function findDMCs() is fixed for memory managment. o The function methEM() is fixed for creating NaN in computing binomial probabilities. ------------------------ CHANGES IN VERSION 0.99.15 ---------------------- CHANGES SINCE LAST TIME o An option is added to findDMC that lets the user enters a function to calculate weights for GLM using the variances obtianed from MCMC. ------------------------ CHANGES IN VERSION 0.99.10 - 0.99.14 ---------------------- CHANGES SINCE LAST TIME o Several issues are fixed. o Some modification are done to expedise the speed of processes. o Instead of the parallel package, the BioParallel package is used. ------------------------ CHANGES IN VERSION 0.99.9 ---------------------- CHANGES SINCE LAST TIME o Some parameters in examples are changed to make the running time faster. o The BSData-method is changed to cBSData-method. o The BSDMCs-method is changed to cBSDMCs-method. BUG FIXES o None reported. ------------------------ CHANGES IN VERSION 0.99.0 ---------------------- IMPROVEMENTS SINCE LAST TIME o We have refined some of the codes to speed up the running the package. FUTURE DEVELOPMENT o Some functions will be rewitten in C. BUG FIXES o None reported so far.