vidger

DOI: 10.18129/B9.bioc.vidger    

Create rapid visualizations of RNAseq data in R

Bioconductor version: Release (3.9)

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Author: Brandon Monier [aut, cre], Adam McDermaid [aut], Jing Zhao [aut], Qin Ma [aut, fnd]

Maintainer: Brandon Monier <brandon.monier at gmail.com>

Citation (from within R, enter citation("vidger")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vidger")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vidger")

 

HTML R Script Visualizing RNA-seq data with ViDGER
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization
Version 1.4.4
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License GPL-3 | file LICENSE
Depends R (>= 3.5)
Imports Biobase, DESeq2, edgeR, GGally, ggplot2, ggrepel, knitr, RColorBrewer, rmarkdown, scales, stats, SummarizedExperiment, tidyr, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL https://github.com/btmonier/vidger https://bioconductor.org/packages/release/bioc/html/vidger.html
BugReports https://github.com/btmonier/vidger/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vidger_1.4.4.tar.gz
Windows Binary vidger_1.4.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) vidger_1.4.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/vidger
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vidger
Package Short Url https://bioconductor.org/packages/vidger/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive

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