qsmooth

DOI: 10.18129/B9.bioc.qsmooth    

Smooth quantile normalization

Bioconductor version: Release (3.9)

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Author: Stephanie C. Hicks [aut, cre] , Kwame Okrah [aut], Hector Corrada Bravo [aut] , Rafael Irizarry [aut]

Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("qsmooth")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qsmooth")

 

HTML R Script The qsmooth user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License CC BY 4.0
Depends R (>= 3.6.0)
Imports SummarizedExperiment, utils, sva, stats, methods, graphics
LinkingTo
Suggests bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qsmooth_1.0.0.tar.gz
Windows Binary qsmooth_1.0.0.zip
Mac OS X 10.11 (El Capitan) qsmooth_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qsmooth
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qsmooth
Package Short Url https://bioconductor.org/packages/qsmooth/
Package Downloads Report Download Stats

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