qckitfastq

DOI: 10.18129/B9.bioc.qckitfastq    

FASTQ Quality Control

Bioconductor version: Release (3.9)

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")

 

PDF R Script Quality control analysis and visualization using qckitfastq
PDF   Reference Manual
Text   NEWS

Details

biocViews QualityControl, Sequencing, Software
Version 1.0.1
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License Artistic-2.0
Depends
Imports magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn
LinkingTo Rcpp, RSeqAn
Suggests knitr, rmarkdown, kableExtra, testthat
SystemRequirements GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qckitfastq_1.0.1.tar.gz
Windows Binary qckitfastq_1.0.1.zip
Mac OS X 10.11 (El Capitan) qckitfastq_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/qckitfastq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qckitfastq
Package Short Url https://bioconductor.org/packages/qckitfastq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive

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