plethy

DOI: 10.18129/B9.bioc.plethy    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see plethy.

R framework for exploration and analysis of respirometry data

Bioconductor version: 3.9

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plethy")

 

PDF R Script plethy
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.22.0
In Bioconductor since BioC 2.13 (R-3.0) (6 years)
License GPL-3
Depends R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
LinkingTo
Suggests RUnit, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plethy_1.22.0.tar.gz
Windows Binary plethy_1.22.0.zip
Mac OS X 10.11 (El Capitan) plethy_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plethy
Package Short Url https://bioconductor.org/packages/plethy/
Package Downloads Report Download Stats

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