geneplotter

DOI: 10.18129/B9.bioc.geneplotter    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneplotter.

Graphics related functions for Bioconductor

Bioconductor version: 3.9

Functions for plotting genomic data

Author: R. Gentleman, Biocore

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("geneplotter")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")

 

PDF R Script How to assemble a chromLocation object
PDF R Script Visualization of Microarray Data
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Software, Visualization
Version 1.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License Artistic-2.0
Depends R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate
Imports AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils
LinkingTo
Suggests Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db
SystemRequirements
Enhances
URL
Depends On Me HD2013SGI, Hiiragi2013, HMMcopy, maEndToEnd, PGPC
Imports Me biocGraph, DESeq, DESeq2, DEXSeq, ENmix, EnrichmentBrowser, flowQ, GSVA, IsoGeneGUI, JunctionSeq, MethylSeekR, RNAinteract, RNAither
Suggests Me AgiMicroRna, BiocCaseStudies, biocGraph, Category, chimera, GOstats, Single.mTEC.Transcriptomes
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneplotter_1.62.0.tar.gz
Windows Binary geneplotter_1.62.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) geneplotter_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/geneplotter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/geneplotter
Package Short Url https://bioconductor.org/packages/geneplotter/
Package Downloads Report Download Stats

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