diggit

DOI: 10.18129/B9.bioc.diggit    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see diggit.

Inference of Genetic Variants Driving Cellular Phenotypes

Bioconductor version: 3.9

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggit")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")

 

PDF R Script Using DIGGIT
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License file LICENSE
Depends R (>= 3.0.2), Biobase, methods
Imports ks, viper(>= 1.3.1), parallel
LinkingTo
Suggests diggitdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package diggit_1.16.0.tar.gz
Windows Binary diggit_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) diggit_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diggit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diggit
Package Short Url https://bioconductor.org/packages/diggit/
Package Downloads Report Download Stats

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