GA4GHclient

DOI: 10.18129/B9.bioc.GA4GHclient    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GA4GHclient.

A Bioconductor package for accessing GA4GH API data servers

Bioconductor version: 3.9

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHclient")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GA4GHclient")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHclient")

 

HTML R Script GA4GHclient
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Software, ThirdPartyClient
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (2.5 years)
License GPL (>= 2)
Depends S4Vectors
Imports BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation
LinkingTo
Suggests AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/labbcb/GA4GHclient
BugReports https://github.com/labbcb/GA4GHclient/issues
Depends On Me GA4GHshiny
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHclient_1.8.0.tar.gz
Windows Binary GA4GHclient_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GA4GHclient_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHclient
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHclient
Package Short Url https://bioconductor.org/packages/GA4GHclient/
Package Downloads Report Download Stats

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