DNABarcodes

DOI: 10.18129/B9.bioc.DNABarcodes    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DNABarcodes.

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: 3.9

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Citation (from within R, enter citation("DNABarcodes")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNABarcodes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNABarcodes")

 

HTML R Script DNABarcodes
PDF   Reference Manual
Text   NEWS

Details

biocViews Preprocessing, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License GPL-2
Depends Matrix, parallel
Imports Rcpp (>= 0.11.2), BH
LinkingTo Rcpp, BH
Suggests knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me DNABarcodeCompatibility
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DNABarcodes_1.14.0.tar.gz
Windows Binary DNABarcodes_1.14.0.zip
Mac OS X 10.11 (El Capitan) DNABarcodes_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNABarcodes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DNABarcodes
Package Short Url https://bioconductor.org/packages/DNABarcodes/
Package Downloads Report Download Stats

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