determineTypeNumBasesAndTrDir {decompTumor2Sig}R Documentation

determineTypeNumBasesAndTrDir (internal function)

Description

For a given signature or genome representation: determine the type (Shiraishi or Alexandrov), the number of bases, and whether transcription-strand information is included.

Usage

determineTypeNumBasesAndTrDir(mutData)

Arguments

mutData

The mutation frequency data of the signature or genome.

Value

A list object composed of: "type"=type of signature or genome; "numBases"=number of bases of the sequence patterns; and "trDir"=logical value indicating whether transcription-strand information has been considered in the mutation frequency data.

Author(s)

Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics (accepted for publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo, Italy. PeerJ Preprints 5:e3257v1, 2017.


[Package decompTumor2Sig version 2.0.0 Index]