plotAlexandrovModel {decompTumor2Sig}R Documentation

plotAlexandrovModel (internal function)

Description

'plotAlexandrovModel()' plots a single signature or the mutation frequency data for a single genome of the Alexandrov-type model.

Usage

plotAlexandrovModel(mutData, numBases, trDir, colors = NULL,
strip = NULL)

Arguments

mutData

(Mandatory) The signature or genome mutation frequency data to be plotted.

numBases

The number of bases of the sequence pattern.

trDir

Logical value specifying whether transcription strand information is present.

colors

Vector of six colors to be used for the base change data. If NULL (default), the colors are set to those used by the COSMIC website.

strip

Background color for strip labels. If NULL (default), "papayawhip" will be used.

Value

Returns (or draws) a plot according to the Alexandrov model of mutational signatures.

Author(s)

Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics (accepted for publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo, Italy. PeerJ Preprints 5:e3257v1, 2017.


[Package decompTumor2Sig version 2.0.0 Index]