plotShiraishiModel {decompTumor2Sig}R Documentation

plotShiraishiModel (internal function)

Description

'plotShiraishiModel()' plots a single signature or the mutation frequency data for a single genome of the Shiraishi-type model.

Usage

plotShiraishiModel(mutData, numBases, trDir, colors = NULL)

Arguments

mutData

(Mandatory) The signature or genome mutation frequency data to be plotted.

numBases

The number of bases of the sequence pattern.

trDir

Logical value specifying whether transcription strand information is present.

colors

Vector of four colors to be used for the base data. If NULL (default), the colors are consensus colors used for sequence logos.

Value

Returns (or draws) a plot according to the Shiraishi model of mutational signatures.

Author(s)

Rosario M. Piro
Freie Universitaet Berlin
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <r.piro@fu-berlin.de>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2018) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics (accepted for publication).
Krueger, Piro (2017) Identification of Mutational Signatures Active in Individual Tumors. NETTAB 2017 - Methods, Tools & Platforms for Personalized Medicine in the Big Data Era, October 16-18, 2017, Palermo, Italy. PeerJ Preprints 5:e3257v1, 2017.


[Package decompTumor2Sig version 2.0.0 Index]