High-quality circular visualization of omics data


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Documentation for package ‘OmicCircos’ version 1.22.0

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circos draw circular
OmicCircos OmicCircos package
segAnglePo generate circular skeleton data from user's mapping data
segAnglePo-method ~~ Methods for Function 'segAnglePo' ~~
segAnglePo-methods ~~ Methods for Function 'segAnglePo' ~~
sim.circos circular data simulation
TCGA.BC.cnv.2k.60 copy number data of TCGA Breast Cancer
TCGA.BC.fus TCGA Breast Cancer gene fusion data.
TCGA.BC.gene.exp.2k.60 TCGA BRCA expression data
TCGA.BC.sample60 TCGA BRCA Sample names and subtypes
TCGA.BC_Her2_cnv_exp TCGA BRCA expression and cnv association
TCGA.PAM50_genefu_hg18 BRCA PAM50 gene list (hg18)
UCSC.chr.colors chromosome banding colors
UCSC.hg18 human hg18 circumference coordinates
UCSC.hg18.chr human hg18 segment data.
UCSC.hg19 human hg19 circumference coordinates
UCSC.hg19.chr human hg19 segment data
UCSC.mm10 mouse mm10 circumference coordinates
UCSC.mm10.chr mouse mm10 segment data.
UCSC.mm9 mouse mm9 circumference coordinates
UCSC.mm9.chr mouse mm9 segment data.