quantsmooth

DOI: 10.18129/B9.bioc.quantsmooth    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see quantsmooth.

Quantile smoothing and genomic visualization of array data

Bioconductor version: 3.8

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("quantsmooth")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("quantsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")

 

PDF R Script quantsmooth
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Software, Visualization
Version 1.48.0
In Bioconductor since BioC 1.9 (R-2.4) (12.5 years)
License GPL-2
Depends R (>= 2.10.0), quantreg, grid
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me beadarraySNP
Imports Me GWASTools, SIM
Suggests Me PREDA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package quantsmooth_1.48.0.tar.gz
Windows Binary quantsmooth_1.48.0.zip
Mac OS X 10.11 (El Capitan) quantsmooth_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/quantsmooth
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/quantsmooth
Package Short Url http://bioconductor.org/packages/quantsmooth/
Package Downloads Report Download Stats

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