motifRG

DOI: 10.18129/B9.bioc.motifRG    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 3.8

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("motifRG")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF R Script motifRG: regression-based discriminative motif discovery
PDF   Reference Manual

Details

biocViews MotifDiscovery, Software, Transcription
Version 1.26.0
In Bioconductor since BioC 2.10 (R-2.15) (7 years)
License Artistic-2.0
Depends R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me RCAS
Imports Me
Suggests Me universalmotif
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package motifRG_1.26.0.tar.gz
Windows Binary motifRG_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) motifRG_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/motifRG
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/motifRG
Package Short Url http://bioconductor.org/packages/motifRG/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: