keggorthology

DOI: 10.18129/B9.bioc.keggorthology    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see keggorthology.

graph support for KO, KEGG Orthology

Bioconductor version: 3.8

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("keggorthology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

 

PDF R Script keggorthology overview
PDF   Reference Manual

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, Visualization
Version 2.34.0
In Bioconductor since BioC 2.6 (R-2.11) (9 years)
License Artistic-2.0
Depends R (>= 2.5.0), stats, graph, hgu95av2.db
Imports AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
LinkingTo
Suggests RBGL, ALL
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MLInterfaces
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package keggorthology_2.34.0.tar.gz
Windows Binary keggorthology_2.34.0.zip
Mac OS X 10.11 (El Capitan) keggorthology_2.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/keggorthology
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/keggorthology
Package Short Url http://bioconductor.org/packages/keggorthology/
Package Downloads Report Download Stats

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