frma

DOI: 10.18129/B9.bioc.frma    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see frma.

Frozen RMA and Barcode

Bioconductor version: 3.8

Preprocessing and analysis for single microarrays and microarray batches.

Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>, with contributions from Terry Therneau

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("frma")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("frma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("frma")

 

PDF R Script frma: Preprocessing for single arrays and array batches
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, Preprocessing, Software
Version 1.34.0
In Bioconductor since BioC 2.6 (R-2.11) (9 years)
License GPL (>= 2)
Depends R (>= 2.10.0), Biobase(>= 2.6.0)
Imports Biobase, MASS, DBI, affy, methods, oligo, oligoClasses, preprocessCore, utils, BiocGenerics
LinkingTo
Suggests hgu133afrmavecs, frmaExampleData
SystemRequirements
Enhances
URL http://bioconductor.org
Depends On Me
Imports Me ChIPXpress, DeSousa2013
Suggests Me antiProfilesData, frmaTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package frma_1.34.0.tar.gz
Windows Binary frma_1.34.0.zip
Mac OS X 10.11 (El Capitan) frma_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/frma
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/frma
Package Short Url http://bioconductor.org/packages/frma/
Package Downloads Report Download Stats

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