flowPloidy

DOI: 10.18129/B9.bioc.flowPloidy    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see flowPloidy.

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: 3.8

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Citation (from within R, enter citation("flowPloidy")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowPloidy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPloidy")

 

PDF R Script flowPloidy: FCM Histograms
PDF R Script flowPloidy: Getting Started
PDF   Reference Manual
Text   NEWS

Details

biocViews FlowCytometry, GUI, Regression, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL-3
Depends R (>= 3.4)
Imports flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils
LinkingTo
Suggests flowPloidyData, testthat
SystemRequirements
Enhances
URL https://github.com/plantarum/flowPloidy
BugReports https://github.com/plantarum/flowPloidy/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowPloidy_1.8.0.tar.gz
Windows Binary flowPloidy_1.8.0.zip
Mac OS X 10.11 (El Capitan) flowPloidy_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowPloidy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowPloidy
Package Short Url http://bioconductor.org/packages/flowPloidy/
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