esetVis

DOI: 10.18129/B9.bioc.esetVis    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see esetVis.

Visualizations of expressionSet Bioconductor object

Bioconductor version: 3.8

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("esetVis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("esetVis")

 

HTML R Script esetVis package
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL-3
Depends
Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods
LinkingTo
Suggests ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package esetVis_1.8.0.tar.gz
Windows Binary esetVis_1.8.0.zip
Mac OS X 10.11 (El Capitan) esetVis_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/esetVis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/esetVis
Package Short Url http://bioconductor.org/packages/esetVis/
Package Downloads Report Download Stats

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